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1.
Arch Microbiol ; 206(5): 222, 2024 Apr 20.
Article in English | MEDLINE | ID: mdl-38642140

ABSTRACT

Animal feed is vulnerable to fungal infections, and the use of bio-preserving probiotics has received increasing attention. In contrast to Lactobacillus and Bifidobacteria spp., fewer Bacillus spp. have been recognized as antifungal probiotics. Therefore, our objective was to screen antifungal strains and provide more Bacillus candidates to bridge this gap. Here, we screened 56 bacterial strains for cyclic lipopeptide genes and conducted an antifungal assay with Aspergillus niger as a representative fungus. We found that a Bacillus strain Bacillus amyloliquefaciens PM415, isolated from pigeon manure, exhibited the highest fungal inhibition activity as demonstrated by the confrontation assay and morphological observation under scanning electron microscope (SEM). Preliminary safety assessment and probiotic characterization revealed its non-pathogenic feature and stress tolerance capability. Whole genome sequencing of Bacillus amyloliquefaciens PM415 revealed a genome size of 4.16 Mbp and 84 housekeeping genes thereof were used for phylogenetic analysis showing that it is most closely related to Bacillus amyloliquefaciens LFB112. The in silico analysis further supported its non-pathogenic feature at the genomic level and revealed potential biosynthetic gene clusters responsible for its antifungal property. RNA-seq analysis revealed genome-wide changes in transportation, amino acid metabolism, non-ribosomal peptides (NRPs) biosynthesis and glycan degradation during fungal antagonism. Our results suggest that Bacillus amyloliquefaciens PM415 is a safe and effective probiotic strain that can prevent fungal growth in animal feeds.


Subject(s)
Bacillus amyloliquefaciens , Bacillus , Probiotics , Animals , Bacillus amyloliquefaciens/chemistry , Antifungal Agents/pharmacology , Antifungal Agents/metabolism , Phylogeny
2.
J Biosci Bioeng ; 136(5): 383-390, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37775439

ABSTRACT

The high purine diet could result in the increase of the level of blood uric acid, causing serious health problems such as hyperuricemia, gout, nephropathy and cardiovascular diseases. To find out a safe, cheap and super adsorption material for removing purines in stomach or pretreating high-purine beverages, we used different tissues of pomelo peel to prepare biomass carbon by drying, chemical modification and carbonization and then applied it to remove purine compounds in strong acidic solution, beer and soybean milk. The characteristic analysis of pomelo-peel-derived carbons (PPCs) indicated that the preparation methods significantly affected the structures and adsorption capacities of PPCs. Compared with the biomass carbon derived from bamboo, PPCs exhibited higher adsorption capabilities for purine compounds in strong acidic solution (adsorption rates > 99% in 15 min) and soybean milk (adsorption rates > 56% in 30 min) but slightly lower adsorption capabilities in beer (adsorption rates > 52% in 30 min). In addition, the adsorption capabilities of PPCs for purine compounds in beer and soybean milk were not obviously affected by temperatures. Therefore, PPCs are promising absorbents for applications in removing purine compounds from beverages to produce low-purine, healthier products for treating hyperuricemia. The strong adsorption capabilities of PPCs on purine compounds in strong acidic environment also provides a possibility of using the PPCs as food additives for removing purines in stomach for healthcare applications such as gout prevention after confirming their biosafety.

3.
Microbiologyopen ; 9(5): e1019, 2020 05.
Article in English | MEDLINE | ID: mdl-32113194

ABSTRACT

Microbially derived surfactants, so-called biosurfactants, have attracted significant attention as an environmentally friendly alternative to their chemically synthesized counterparts. Particularly, rhamnolipids offer a large potential with their outstanding surfactant properties such as complete biodegradability, low toxicity, and stability. Rhamnolipids are naturally synthesized by the opportunistic human pathogen Pseudomonas aeruginosa under the tight regulation of a highly complex quorum-sensing system. The heterologous production of mono-rhamnolipids by a newly isolated nonpathogenic strain of the genus Pantoea was investigated. Analysis of the genome obtained by a chimeric assembly of Nanopore long reads and high-quality Illumina reads suggested that the strain has evolved to an epiphytic rather than a pathogenic lifestyle. Functional heterologous expression of the mono-rhamnolipid operon rhlAB derived from a P. aeruginosa strain was established and confirmed by HPLC analysis. Transcriptome analysis indicated destabilizing effects of the produced rhamnolipids on the cell envelope of the host resulting in the induction of molecular stress responses. After integration of the rmlBCDA operon, extracellular rhamnolipids in amounts up to 0.4 g/L could be detected and were identified as a mono-rhamnolipid Rha-C10 -C10 by MALDI-TOF mass spectrometry.


Subject(s)
Decanoates/metabolism , Glycolipids/biosynthesis , Pantoea/genetics , Pantoea/metabolism , Pseudomonas aeruginosa/genetics , Rhamnose/analogs & derivatives , Drug Resistance, Multiple, Bacterial/genetics , Gene Expression Profiling , Genes, Bacterial , Mass Spectrometry , Metabolic Engineering , Operon , Pantoea/isolation & purification , Plasmids , Rhamnose/metabolism , Surface-Active Agents/metabolism
4.
Biotechnol Adv ; 36(8): 2187-2200, 2018 12.
Article in English | MEDLINE | ID: mdl-30385277

ABSTRACT

Bacteriocins are low molecular weight peptides secreted by the predator bacterial cells to kill sensitive cells present in the same ecosystem competing for food and other nutrients. Exceptionally few bacteriocins along with their native antibacterial property also exhibit additional anti-viral and anti-fungal properties. Bacteriocins are generally produced by Gm+, Gm- and archaea bacteria. Bacteriocins from Gm + bacteria especially from lactic acid bacteria (LAB) have been thoroughly investigated considering their great biosafety and broad industrial applications. LAB expressing bacteriocins were isolated from fermented milk and milk products, rumen of animals and soil using deferred antagonism assay. Nisin is the only bacteriocin that has got FDA approval for application as a food preservative, which is produced by Lactococcus lactis subsp. Lactis. Its crystal structure explains that its antimicrobial properties are due to the binding of NH2 terminal to lipid II molecule inhibiting the peptidoglycan synthesis and carboxy terminal forming pores in bacterial cell membrane leading to cell lysis. The hinge region connecting NH2 and carboxy terminus has been mutated to generate mutant variants with higher antimicrobial activity. In a 50 ton fermentation of the mutant strain 3807 derived from L. lactis subsp. lactis ATCC 11454, 9,960 IU/mL of nisin was produced. Currently, high purity of nisin (>99%) is very expensive and hardly commercially available. Development of more advanced tools for cost-effective separation and purification of nisin would be commercially attractive. Chemical synthesis and heterologous expression of bacteriocins ended in low yields of pure proteins. At present, bacteriocins are almost solely applied in food industries, but they have a great potential to be used in other fields such as feeds, organic fertilizers, environmental protection and personal care products. The future of bacteriocins is largely dependent on getting FDA approval for use of other bacteriocins in addition to nisin to promote the research and applications.


Subject(s)
Bacteriocins , Metabolic Engineering , Synthetic Biology , Anti-Bacterial Agents/metabolism , Bacteriocins/genetics , Bacteriocins/metabolism , Lactococcus lactis/genetics , Lactococcus lactis/metabolism
5.
Biotechnol Appl Biochem ; 65(2): 145-149, 2018 Mar.
Article in English | MEDLINE | ID: mdl-28436165

ABSTRACT

Thermophilic Bacillus coagulans JI12 was used to ferment hemicellulose hydrolysate obtained by acid hydrolysis of oil palm empty fruit bunch at 50 °C and pH 6, producing 105.4 g/L of l-lactic acid with a productivity of 9.3 g/L/H by fed-batch fermentation under unsterilized conditions. Simultaneous saccharification and fermentation (SSF) was performed at pH 5.5 and 50 °C to convert both hemicellulose hydrolysate and cellulose-lignin complex in the presence of Cellic Ctec2 cellulases using yeast extract (20 g/L) as the nitrogen source, giving 114.0 g/L of l-lactic acid with a productivity of 5.7 g/L/H. The SSF was also conducted by replacing yeast extract with equal amount of dry Bakers' yeast, achieving 120.0 g/L of l-lactic acid with a productivity of 4.3 g/L/H. To the best of our knowledge, these lactic acid titers and productivities are the highest ever reported from lignocellulose hydrolysates.


Subject(s)
Bacillus coagulans/metabolism , Lactic Acid/metabolism , Palm Oil/metabolism , Polysaccharides/metabolism , Batch Cell Culture Techniques/methods , Fermentation , Fruit/metabolism , Hydrolysis , Industrial Microbiology/methods , Lignin/metabolism
6.
Appl Microbiol Biotechnol ; 102(3): 1297-1306, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29204897

ABSTRACT

Cellulose is a highly available and renewable carbon source in nature. However, it cannot be directly metabolized by most microbes including Komagataella phaffii (formerly Pichia pastoris), which is a frequently employed host for heterologous protein expression and production of high-value compounds. A K. phaffii strain was engineered that constitutively co-expresses an endoglucanase and a ß-glucosidase both from Aspergillus niger and an exoglucanase from Trichoderma reesei under the control of bidirectional promoters. This engineered strain was able to grow on cellobiose and carboxymethyl cellulose (CMC) but not on Avicel. However, the detected release of cellobiose from Avicel by using the produced mixture of endoglucanase and exoglucanase as well as the released glucose from Avicel by using the produced mixture of all three cellulases at 50 °C indicated the production of exoglucanase under the liquid culture conditions. The successful expression of three cellulases in K. phaffii demonstrated the feasibility to enable K. phaffii to directly use cellulose as a carbon source for producing recombinant proteins or other high-value compounds.


Subject(s)
Cellulase/biosynthesis , Cellulose/metabolism , Pichia/metabolism , Recombinant Proteins/biosynthesis , beta-Glucosidase/biosynthesis , Aspergillus niger/enzymology , Aspergillus niger/genetics , Carbohydrate Metabolism , Carboxymethylcellulose Sodium/metabolism , Cellobiose/metabolism , Cellulase/genetics , Fungal Proteins/biosynthesis , Fungal Proteins/genetics , Promoter Regions, Genetic , Recombinant Proteins/genetics , Trichoderma/enzymology , Trichoderma/genetics , beta-Glucosidase/genetics
7.
Chembiochem ; 19(1): 7-21, 2018 01 04.
Article in English | MEDLINE | ID: mdl-29235217

ABSTRACT

Pichia pastoris is a well-known platform strain for heterologous protein expression. Over the past five years, different strategies to improve the efficiency of recombinant protein expression by this yeast strain have been developed; these include a patent-free protein expression kit, construction of the P. pastoris CBS7435Ku70 platform strain with its high efficiency in site-specific recombination of plasmid DNA into the genomic DNA, the design of synthetic promoters and their variants by combining different core promoters with multiple putative transcription factors, the generation of mutant GAP promoter variants with various promoter strengths, codon optimization, engineering the α-factor signal sequence by replacing the native glutamic acid at the Kex2 cleavage site with the other 19 natural amino acids and the addition of mammalian signal sequence to the yeast signal sequence, and the co-expression of single chaperones, multiple chaperones or helper proteins that aid in recombinant protein folding. Publically available high-quality genome data from multiple strains of P. pastoris GS115, DSMZ 70382, and CBS7435 and the continuous development of yeast expression kits have successfully promoted the metabolic engineering of this strain to produce carotenoids, xanthophylls, nootkatone, ricinoleic acid, dammarenediol-II, and hyaluronic acid. The cell-surface display of enzymes has obviously increased enzyme stability, and high-level intracellular expression of acyl-CoA and ethanol O-acyltransferase, lipase and d-amino acid oxidase has opened up applications in whole-cell biocatalysis for producing flavor molecules and biodiesel, as well as the deracemization of racemic amino acids. High-level expression of various food-grade enzymes, cellulases, and hemicellulases for applications in the food, feed and biorefinery industries is in its infancy and needs strengthening.


Subject(s)
Pichia/metabolism , Proteins/metabolism , Aldehyde Oxidase/genetics , Aldehyde Oxidase/metabolism , Glycosylation , Metabolic Engineering , Methanol/metabolism , Pichia/genetics , Promoter Regions, Genetic , Protein Biosynthesis/genetics , Protein Sorting Signals/genetics , Proteins/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics
8.
Appl Microbiol Biotechnol ; 100(14): 6501-6508, 2016 Jul.
Article in English | MEDLINE | ID: mdl-27183994

ABSTRACT

Thermophilic Bacillus coagulans WCP10-4 is found to be able to convert cellobiose to optically pure L-lactic acid. Its ß-glucosidase activity is detected in whole cells (7.3 U/g dry cells) but not in culture medium, indicating the intracellular location of the enzyme. Its ß-glucosidase activity is observed only when cultured using cellobiose as the sole carbon source, indicating that the expression of this enzyme is tightly regulated in cells. The enzyme is most active at 50 °C and pH 7.0. The supplement of external ß-glucosidase during fermentation of cellobiose (106 g/l) by B. coagulans WCP10-4 increased the fermentation time from 21 to 23 h and decreased the lactic acid yield from 96.1 to 92.9 % compared to the control without ß-glucosidase supplementation. B. coagulans WCP10-4 converted 200 g/l of cellobiose to 196.3 g/l of L-lactic acid at a yield of 97.8 % and a productivity of 7.01 g/l/h. This result shows that B. coagulans WCP10-4 is a highly efficient strain for converting cellobiose to L-lactic acid without the need of supplementing external ß-glucosidases.


Subject(s)
Bacillus coagulans/metabolism , Cellobiose/chemistry , Industrial Microbiology , Lactic Acid/biosynthesis , Carbon/chemistry , Culture Media/chemistry , Fermentation , Hydrogen-Ion Concentration , Temperature , beta-Glucosidase/metabolism
9.
Crit Rev Biotechnol ; 36(6): 967-977, 2016 Dec.
Article in English | MEDLINE | ID: mdl-26260005

ABSTRACT

Lactic acid is an important platform chemical for producing polylactic acid (PLA) and other value-added products. It is naturally produced by a wide spectrum of microbes including bacteria, yeast and filamentous fungi. In general, bacteria ferment C5 and C6 sugars to lactic acid by either homo- or hetero-fermentative mode. Xylose isomerase, phosphoketolase, transaldolase, l- and d-lactate dehydrogenases are the key enzymes that affect the ways of lactic acid production. Metabolic engineering of microbial strains are usually needed to produce lactic acid from unconventional carbon sources. Production of d-LA has attracted much attention due to the demand for producing thermostable PLA, but large scale production of d-LA has not yet been commercialized. Thermophilic Bacillus coagulans strains are able to produce l-lactic acid from lignocellulose sugars homo-fermentatively under non-sterilized conditions, but the lack of genetic tools for metabolically engineering them severely affects their development for industrial applications. Pre-treatment of agriculture biomass to obtain fermentable sugars is a pre-requisite for utilization of the huge amounts of agricultural biomass to produce lactic acid. The major challenge is to obtain quality sugars of high concentrations in a cost effective-way. To avoid or minimize the use of neutralizing agents during fermentation, genetically engineering the strains to make them resist acidic environment and produce lactic acid at low pH would be very helpful for reducing the production cost of lactic acid.

10.
Crit Rev Biotechnol ; 36(6): 967-977, 2016 Dec.
Article in English | MEDLINE | ID: mdl-26287368

ABSTRACT

Lactic acid is an important platform chemical for producing polylactic acid (PLA) and other value-added products. It is naturally produced by a wide spectrum of microbes including bacteria, yeast and filamentous fungi. In general, bacteria ferment C5 and C6 sugars to lactic acid by either homo- or hetero-fermentative mode. Xylose isomerase, phosphoketolase, transaldolase, l- and d-lactate dehydrogenases are the key enzymes that affect the ways of lactic acid production. Metabolic engineering of microbial strains are usually needed to produce lactic acid from unconventional carbon sources. Production of d-LA has attracted much attention due to the demand for producing thermostable PLA, but large scale production of d-LA has not yet been commercialized. Thermophilic Bacillus coagulans strains are able to produce l-lactic acid from lignocellulose sugars homo-fermentatively under non-sterilized conditions, but the lack of genetic tools for metabolically engineering them severely affects their development for industrial applications. Pre-treatment of agriculture biomass to obtain fermentable sugars is a pre-requisite for utilization of the huge amounts of agricultural biomass to produce lactic acid. The major challenge is to obtain quality sugars of high concentrations in a cost effective-way. To avoid or minimize the use of neutralizing agents during fermentation, genetically engineering the strains to make them resist acidic environment and produce lactic acid at low pH would be very helpful for reducing the production cost of lactic acid.


Subject(s)
Lactic Acid/biosynthesis , Bacteria/genetics , Bacteria/isolation & purification , Bacteria/metabolism , Fermentation , Fungi/isolation & purification , Fungi/metabolism , Nitrogen/metabolism
11.
Appl Biochem Biotechnol ; 178(2): 285-93, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26424098

ABSTRACT

Optically pure D-lactic acid was produced from glucose, xylose, or starch by the combined use of Weissella sp. S26 and Bacillus sp. ADS3, two native bacterial strains isolated from Singapore environment. Weissella sp. S26 was used to ferment various sugars to lactic acid rich in D-isomer followed by sterilization of the broth and inoculation of Bacillus sp. ADS3 cells to selectively degrade acetic acid (if any) and L-lactic acid. In a simultaneous saccharification and fermentation of starch by Weissella sp. S26 in 1 L of modified MRS medium containing 50 g/L starch at 30 °C, lactic acid reached 24.2 g/L (23.6 g/L of D-isomers and 0.6 g/L of L-isomers), and acetic acid was 11.8 g/L at 37 h. The fermentation broth was sterilized at 100 °C for 20 min and cooled down to 30 °C followed by inoculation of Bacillus sp. ADS3 (10 %, v/v), and the mixture was kept at 30 °C for 115 h. Acetic acid was completely removed, and L-lactic acid was largely removed giving an optical purity of D-lactic acid as high as 99.5 %.


Subject(s)
Bacillus/metabolism , Lactic Acid/biosynthesis , Weissella/metabolism , Culture Media , Fermentation , Glucose/metabolism , Lactic Acid/metabolism , Xylose/metabolism
12.
Appl Biochem Biotechnol ; 175(4): 2066-74, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25432348

ABSTRACT

For complete degradation of hemicellulose into its monomers from lignocellulose biomass, the synergistic action of a broad range of hydrolytic enzymes is needed. Therefore, production of enzymes from their natural producer is desirable. To obtain a powerful ß-1,4-endoxylanase producing fungus, 304 environmental samples were collected from various locations in Singapore, leading to 603 isolates. Among them, 71 exhibiting ß-1,4-endoxylanase activity were identified belonging mainly to the genera of Aspergillus, Penicillium, and Trichoderma. Further analysis revealed Aspergillus niger DSM 26641 as a potential and stable ß-1,4-endoxylanase producer, being able to grow in hydrothermal lignocellulose hydrolysate exhibiting its maximal ß-1,4-endoxylanase activity at pH 4 and 60 °C. This strain is thought to be very suitable for lactic acid production in a simultaneous saccharification and fermentation at pH values below 5.


Subject(s)
Aspergillus niger/isolation & purification , Endo-1,4-beta Xylanases/metabolism , Fungal Proteins/metabolism , Lignin/metabolism , Penicillium/isolation & purification , Polysaccharides/metabolism , Trichoderma/isolation & purification , Aspergillus niger/classification , Aspergillus niger/enzymology , Aspergillus niger/genetics , Biomass , DNA, Fungal/genetics , Endo-1,4-beta Xylanases/genetics , Fermentation , Fungal Proteins/genetics , Gene Expression , Hot Temperature , Hydrogen-Ion Concentration , Hydrolysis , Lactic Acid/biosynthesis , Penicillium/classification , Penicillium/enzymology , Penicillium/genetics , Phylogeny , Singapore , Trichoderma/classification , Trichoderma/enzymology , Trichoderma/genetics
13.
Microb Cell Fact ; 13: 157, 2014 Nov 11.
Article in English | MEDLINE | ID: mdl-25384340

ABSTRACT

BACKGROUND: Oil palm empty fruit bunch (EFB) is a lignocellulosic waste produced in palm oil industry. EFB mainly consists of cellulose, hemicellulose (mainly xylan) and lignin and has a great potential to be reused. Converting EFB to fermentable sugars and value-added chemicals is a much better choice than treating EFB as waste. RESULTS: A cellulase-producing strain growing on oil palm empty fruit bunch (EFB) was isolated and identified as Neurospora crassa S1, which is able to produce cellulases using EFB as the sole carbon source. The strain started to secret cellulases into the medium after 24 h of cultivation at 30°C and reached its maximal cellulase activity at 240 h. Mass spectroscopy (MS) analysis showed that more than 50 proteins were secreted into the medium when EFB was used as the sole carbon source. Among them, 7 proteins were identified as putative enzymes associated with cellulose degradation. The whole cell culture of Neurospora crassa S1 was used to hydrolyze acid-treated EFB, giving a total sugar yield of 83.2%, which is comparable with that (82.0%) using a well-known cellulase producer Trichoderma reesei RUT-C30 (ATCC56765). CONCLUSION: Neurospora crassa S1 is a commercially promising native cellulase producer for EFB hydrolysis especially when the sugars obtained are to be fermented to products that require use of non-genetically engineered strains.


Subject(s)
Cellulases , Fungal Proteins , Lignin/metabolism , Neurospora crassa , Plant Oils , Cellulases/chemistry , Cellulases/isolation & purification , Cellulases/metabolism , Fruit/microbiology , Fungal Proteins/chemistry , Fungal Proteins/isolation & purification , Fungal Proteins/metabolism , Neurospora crassa/enzymology , Neurospora crassa/growth & development , Neurospora crassa/isolation & purification , Palm Oil
14.
Appl Biochem Biotechnol ; 174(8): 2653-62, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25213085

ABSTRACT

exo-Xylanase X from Aeromonas punctata ME-1 was functionally expressed in Escherichia coli with a carboxy terminal His tag (6×) and a molecular mass of 39.42 kDa, which is in agreement with the prediction from its amino acid composition. The recombinant exo-xylanase reached 186 mg l(-1) after induction by isopropyl ß-D-1-thiogalactopyranoside. Its optimal temperature and pH were 50 °C and 6, respectively. The enzyme showed not only an exo-xylanase activity with K m of 3.90 mg ml(-1) and V max of 12.9 U µg(-1) for hydrolysis of Remazol Brilliant Blue-xylan but also a considerable exo-glucanase activity (27.9 U mg(-1)) on P-nitrophenyl ß-D-cellobioside. It hydrolyzed xylan predominantly to xylobiose, xylotriose, xylotetraose, and xylose. An enzyme mixture of exo-xylanase and endo-xylanase (50 µg ml(-1) each) yielded a larger amount (330 mg l(-1)) of xylose from beechwood xylan than the controls (270 and 150 mg l(-1)) using them alone at 100 µg ml(-1), indicating a synergistic action between the two xylanases favoring the hydrolysis of beechwood xylan to release more xylose.


Subject(s)
Aeromonas , Bacterial Proteins , Endo-1,4-beta Xylanases , Xylans/chemistry , Xylose/chemistry , Aeromonas/enzymology , Aeromonas/genetics , Bacterial Proteins/biosynthesis , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Endo-1,4-beta Xylanases/biosynthesis , Endo-1,4-beta Xylanases/chemistry , Endo-1,4-beta Xylanases/genetics , Escherichia coli/genetics , Escherichia coli/metabolism , Hydrolysis , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics
15.
Appl Biochem Biotechnol ; 174(1): 81-92, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25080375

ABSTRACT

Exo-xylanases are a class of glycosyl hydrolases and play an important role in hydrolysis of xylan to xylose. They belong to glycosyl hydrolase (GH) family 8 with a characteristic (α/α)6 barrel fold in their molecular structures. These enzymes are generally produced by bacteria. Exceptionally, the endo-xylanases from Trichoderma reesei Rut C-30 and a few bacterial strains also show considerable exo-xylanase activities. Exo-xylanases are active on natural xylan substances, hydrolyzing long-chain xylo-oligomers from the reducing end to produce short-chain xylo-oligomers and xylose. Exo-xylanases usually show multiple enzyme functions such as ß-xylosidase, exo-glucanase, ß-glucosidase, and arabinofuranosidase activities, which are helpful for more efficient hydrolysis of xylan. The combined use of exo- and endo-xylanases can increase the xylose yield compared to using either of them alone. Screening new exo-xylanase-producing microbes, mining the enzyme coding sequences, genetically engineering the enzymes, and producing them in a large scale are recommended for their commercial applications in lignocellulose-based biorefinery.


Subject(s)
Endo-1,4-beta Xylanases/chemistry , Fungal Proteins/chemistry , Lignin/chemistry , Trichoderma/enzymology , Xylans/chemistry , Xylose/chemistry , Endo-1,4-beta Xylanases/metabolism , Fungal Proteins/metabolism , Hydrolysis , Lignin/metabolism , Protein Structure, Tertiary , Substrate Specificity , Xylans/metabolism , Xylose/metabolism
16.
J Biosci Bioeng ; 118(6): 696-701, 2014 Dec.
Article in English | MEDLINE | ID: mdl-24958131

ABSTRACT

Palm oil empty fruit bunches (EFB) is an abundant and cheap lignocellulose material in Southeast Asia. Its use as the sole medium for producing lignocellulose-hydrolyzing enzymes would increase its commercial value. A newly isolated Aspergillus niger DSM 26641 was investigated for its capability of producing hemicellulases in EFB hydrolysate obtained by treatment with pressurized hot water (1-20%, w/v) at 120-180°C in a 1 L Parr reactor for 10-60 min. The optimal hydrolysate for the fungal growth and endoxylanase production was obtained when 10% (w/v) of empty fruit bunch was treated at 120°C or 150°C for 10 min, giving an endoxylanase activity of 24.5 mU ml(-1) on RBB-Xylan and a saccharification activity of 5 U ml(-1) on xylan (DNS assay). When the hydrolysates were produced at higher temperatures, longer treatment times or higher biomass contents, only less than 20% of the above maximal endoxylanase activity was detected, possibly due to the higher carbohydrate concentrations in the medium. Transcriptome analysis showed that 3 endoxylanases (expression levels 59-100%, the highest level was set as 100%), 2 ß-xylosidases (4%), 4 side chain-cleaving arabinofuranosidases (1-95%), 1 acetyl xylan esterase (9%) and 2 ferulic acid esterases (0.3-9%) were produced together.


Subject(s)
Aspergillus niger/enzymology , Fruit/chemistry , Gene Expression Profiling , Glycoside Hydrolases/biosynthesis , Glycoside Hydrolases/genetics , Plant Oils , Tissue Extracts/chemistry , Aspergillus niger/genetics , Aspergillus niger/growth & development , Biomass , Endo-1,4-beta Xylanases/genetics , Endo-1,4-beta Xylanases/metabolism , Fruit/microbiology , Hot Temperature , Hydrolysis , Lignin/metabolism , Palm Oil , Singapore , Water
17.
Biotechnol Appl Biochem ; 61(4): 426-31, 2014.
Article in English | MEDLINE | ID: mdl-24329860

ABSTRACT

Empty fruit bunch (EFB) of oil palm trees was converted to fermentable sugars by the combined use of dilute acids and whole fungal cell culture-catalyzed hydrolyses. EFB (5%, w/v) was hydrolyzed in the presence of 0.5% H2 SO4 and 0.2% H3 PO4 at 160 °C for 10 Min. The solid fraction was separated from the acid hydrolysate by filtration and subjected to enzymatic hydrolysis at 50 °C using the whole cell culture of Trichoderma reesei RUT-C30 (2%, w/v), which was prepared by cultivation at 30 °C for 7 days to reach its maximal cellulase activity. The combined hydrolyses of EFB gave a total sugar yield of 82.0%. When used as carbon sources for cultivating Escherichia coli in M9 medium at 37 °C, the combined EFB hydrolysates were shown to be more favorable or at least as good as pure glucose for cell growth in terms of the higher (1.1 times) optical density of E. coli cells. The by-products generated during the acid-catalyzed hydrolysis did not seem to obviously affect cell growth. The combined use of acid and whole cell culture hydrolyses might be a commercially promising method for pretreatment of lignocellulose to get fermentable sugars.


Subject(s)
Carbohydrates/biosynthesis , Fermentation , Fruit/chemistry , Phosphoric Acids/chemistry , Plant Oils/chemistry , Sulfuric Acids/chemistry , Trichoderma/cytology , Catalysis , Cell Culture Techniques , Escherichia coli/cytology , Escherichia coli/growth & development , Escherichia coli/metabolism , Fruit/metabolism , Hydrolysis , Plant Oils/metabolism , Trichoderma/growth & development , Trichoderma/metabolism
18.
Appl Microbiol Biotechnol ; 97(11): 4831-8, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23504058

ABSTRACT

Cost-effective conversion of lignocellulose hydrolysate to optically pure lactic acid is commercially attractive but very challenging. Bacillus coagulans JI12 was isolated from natural environment and used to produce L-lactic acid (optical purity > 99.5 %) from lignocellulose sugars and acid hydrolysate of oil palm empty fruit bunch (EFB) at 50 °C and pH 6.0 without sterilization of the medium. In fed-batch fermentation with 85 g/L initial xylose and 55 g/L xylose added after 7.5 h, 137.5 g/L lactic acid was produced with a yield of 98 % and a productivity of 4.4 g/L h. In batch fermentation of a sugar mixture containing 8.5 % xylose, 1 % glucose, and 1 % L-arabinose, the lactic acid yield and productivity reached 98 % and 4.8 g/L h, respectively. When EFB hydrolysate was used, 59.2 g/L of lactic acid was produced within 9.5 h at a yield of 97 % and a productivity of 6.2 g/L h, which are the highest among those ever reported from lignocellulose hydrolysates. These results indicate that B. coagulans JI12 is a promising strain for industrial production of L-lactic acid from lignocellulose hydrolysate.


Subject(s)
Arecaceae/chemistry , Bacillus/metabolism , Lactic Acid/metabolism , Lignin/metabolism , Bacillus/classification , Bacillus/genetics , Bacillus/isolation & purification , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Environmental Microbiology , Fermentation , Fruit/chemistry , Lignin/isolation & purification , Molecular Sequence Data , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Temperature
19.
Bioresour Technol ; 132: 38-44, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23399496

ABSTRACT

Cost-effective production of optically pure lactic acid from lignocellulose sugars is commercially attractive but challenging. Bacillus coagulans C106 was isolated from environment and used to produce l-lactic acid from xylose at 50°C and pH 6.0 in mineral salts medium containing 1-2% (w/v) of yeast extract without sterilizing the medium before fermentation. In batch fermentation with 85g/L of xylose, lactic acid titer and productivity reached 83.6g/L and 7.5g/Lh, respectively. When fed-batch (120+80+60g/L) fermentation was applied, they reached 215.7g/L and 4.0g/Lh, respectively. In both cases, the lactic acid yield and optical purity reached 95% and 99.6%, respectively. The lactic acid titer and productivity on xylose are the highest among those ever reported. Ca(OH)2 was found to be a better neutralizing agent than NaOH in terms of its giving higher lactic acid titer (1.2-fold) and productivity (1.8-fold) under the same conditions.


Subject(s)
Bacillus/metabolism , Bioreactors , Lactic Acid/biosynthesis , Xylose/metabolism , Bacillus/genetics , Calcium Hydroxide , Chromatography, High Pressure Liquid , Computational Biology , DNA Primers/genetics , DNA, Ribosomal/genetics , Fermentation , L-Lactate Dehydrogenase/metabolism , Sequence Analysis, DNA
20.
Appl Microbiol Biotechnol ; 97(10): 4309-14, 2013 May.
Article in English | MEDLINE | ID: mdl-23354450

ABSTRACT

A thermophilic Bacillus coagulans WCP10-4 with tolerance to high concentration of glucose was isolated from soil and used to produce optically pure L-lactic acid from glucose and starch. In batch fermentation at pH 6.0, 240 g/L of glucose was completely consumed giving 210 g/L of L-lactic acid with a yield of 95 % and a productivity of 3.5 g/L/h. In simultaneous saccharification and fermentation at 50 °C without sterilizing the medium, 200 g/L of corn starch was completely consumed producing 202.0 g/L of L-lactic acid. To the best of our knowledge, this strain shows the highest osmotic tolerance to glucose among the strains ever reported for lactic acid production. This is the first report of simultaneous saccharification and fermentation of starch for lactic acid production under a non-sterilized condition.


Subject(s)
Bacillus/metabolism , Lactic Acid/biosynthesis , Base Sequence , DNA Primers , Fermentation , Glucose/metabolism , Hydrogen-Ion Concentration , Starch/metabolism
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